Jens Hainmueller's research has appeared in journals such as the American Political Science Review, American Journal of Political Science, Journal of the American Statistical Association, Review of Economics and Statistics, Political Analysis, International Organization, and the Journal of Statistical Software, and has received awards from the American Political Science Association, the Society of Political Methodology, the Midwest Political Science Association.

Hainmueller received his PhD from Harvard University and also studied at the London School of Economics, Brown University, and the University of Tübingen. Before joining Stanford, he served on the faculty of the Massachusetts Institute of Technology.